TB, yeast and E. coli Links

general  -   tb  -   yeast  -   ecoli  -   expression

general
  • Sequencing projects at Sanger Centre (including yeasts, tb, other microbial genomes, human, and others)
  • microbial genomes mail list at QMW
  • elegansNet
  • Enzyme nomenclature
  • euGenes
  • Arabidopsis Functional Genomics Consortium
  • GeneOntology
  • KEGG

    tb
  • Stanford Center for TB Research
  • TubercuList
  • M.tb genome analysis server

    yeast
  • Schizosaccharomyces pombe web info including genome sequencing, yeast-interested people and labs, Fission Yeast Handbook, research history, yeast newsgroup, international fission yeast meeting, etc
  • The WWW Virtual Library of Yeast
  • Yeast journal
  • Saccharomyces Genome Database
  • MIPS
  • Triples, a database of TRansposon-Insertion Phenotypes, Localization, and Expression in Saccharomyces.
  • Yeast Intron Database
  • Yeast Genome Protein-Protein Interactions
  • YPD
  • Yeast Resource Center
  • ExpressDB, yeast RNA expression data
  • Yale Genome Analysis Center
  • Visualisation of Microarray Gene Expression Data
  • Yeast Community Portal
  • Yeast protein function assignment
  • EUROFAN

    e.coli
  • GenProtEC E. coli genome and proteome database and function summary
  • EcoCyc
  • The Ecoli Index
  • E. coli sequencing project

    expression data
  • Several links to expression data
  • Many links to microarray technology and papers
  • Papers on microarray data analysis
  • Search for microarrays in the Bio Notebook
  • Many more microarray links
  • DeRisi et al's Exploring the metabolic and genetic control of gene expression on a genomic scale data (Science 1997 October 24; 278: 680-686)
  • Chu et al's The Transcriptional Program of Sporulation in Budding Yeast data (Science 1998 October 23; 282: 699-705)
  • Spellman et al's Yeast Cell Cycle Analysis Project data (Mol. Biol. Cell 9(12):3273-3297, 1998)
  • Eisen et al's Cluster Analysis and Display of Genome-wide Expression Patterns data (PNAS 1998, 95:14863-14868)
  • Analysis of the Yeast Transcriptome, Jansen & Gerstein, Nucleic Acids Research, 2000, Vol.28, No.6, pp.1481-1488
  • Jelinsky and Samson's Global Response of Saccharomyces cerevisiae to an Alkylating Agent data, PNAS 1999 96 (4): p. 1486-1491
  • NCBI's Gene Expression Omnibus
  • DNA Microarrays page with good papers listing
  • US EPA microarray consortium
  • Speed's microarray data analysis group
  • GeneX open source gene epression database

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