UWA > Comp.Sci. > Hardy

Publications

Robert Hoehndorf, Nigel W. Hardy, David Osumi-Sutherland, Susan Tweedie, Paul N. Schofield, Georgios V. Gkoutos Systematic Analysis of Experimental Phenotype Data Reveals Gene Functions. PLoS ONE 8(4): e60847. (2013) doi:10.1371/journal.pone.0060847

BaniMustafa, Ahmed Hmaidan, and Nigel W. Hardy. A Strategy for Selecting Data Mining Techniques in Metabolomics. In: Plant Metabolomics: Methods and Protocols (Methods in Molecular Biology 860) Nigel W. Hardy, Robert D. Hall (Eds) Humana Press. (2012)

Robert D. Hall and Nigel W. Hardy Pactical Applications of Metabolomics in Plant Biology. In: Plant Metabolomics: Methods and Protocols (Methods in Molecular Biology 860) Nigel W. Hardy, Robert D. Hall (Eds) Humana Press. (2012)

Carsten Kettner, Dawn Field, Susanna Sansone, Chris Taylor, Jan Aerts, Nigel Binns, Andrew Black, Cedrik M. Britten, Ario de Marco, Jennifer Fostel, Pascale Gaudet, Alejandra Gonzalez-Beltran, Nigel Hardy, Jan Hellmans, Hennin Hermjakob, Nick Juty, Jim Leebens-Mack, Eamonn Maguire, Steffen Neumann, Sandra Orchard, Helen Parkinson, William Piel, Shoba Ranganathan, Philippe Rocca-Serra, Annapaola Santarsiero, David Shotton, Peter Sterk, Andreas Untergasser, Patricia L. Whetzel Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop Standards in Genomic Sciences3(3):259-266 (2010) http://sigen.org/index.php/sigen/article/view/sigs.1473621

Chris F Taylor, Dawn Field, Susanna-Assunta Sansone, Jan Aerts, Rolf Apweiler, Michael Ashburner, , Pierre-Alain Binz, Molly Bogue, Tim Booth, Alvis Brazma, Ryan R Brinkman, Catherine A Ball, Eric W Deutsch, Oliver Fiehn, Jennifer Fostel, Peter Ghazal, Frank Gibson, Adam Michael Clark, Graeme Grimes, John M Hancock, Nigel W Hardy, Henning Hermjakob, Randall K Julian Jr, Tanya Gray, Carsten Kettner, Christopher Kinsinger, Eugene Kolker, Martin Kuiper, Matthew Kane, Jim Leebens-Mack, Suzanna E Lewis, Phillip Lord, Ann-Marie Mallon, Nicolas Le Novère, Hiroshi Masuya, Ruth McNally, Alexander Mehrle, Norman Morrison, Nishanth Marthandan, John Quackenbush, James M Reecy, Donald G Robertson, Philippe Rocca-Serra, Sandra Orchard, Heiko Rosenfelder, Javier Santoyo-Lopez, Richard H Scheuermann, Daniel Schober, Henry Rodriguez, Jason Snape, Christian J Stoeckert Jr, Keith Tipton, Peter Sterk, Andreas Untergasser, Barry Smith,Jo Vandesompele,Stefan Wiemann Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project Nature Biotechnology 26(8):889-896 (2008) http://dx.doi.org/doi:10.1038/nbt.1411

Susanna-Assunta Sansone, Philippe Rocca-Serra, Marco Brandizi, Alvis Brazma, Dawn Field, Jennifer Fostel, Andrew G. Garrow, Jack Gilbert, Federico Goodsaid, Nigel Hardy, Phil Jones, Allyson Lister, Michael Miller, Norman Morrison, Tim Rayner, Nataliya Sklyar, Chris Taylor, Weida Tong, Guy Warner, Stefan Wiemann The First RSBI (ISA-TAB) Workshop: "Can a Simple Format Work for Complex Studies?" OMICS: A Journal of Integrative Biology 12(2):143-149 (2008). http://dx.doi.org/doi:10.1089/omi.2008.0019

Andrew R Jones, Michael Miller, Ruedi Aebersold, Rolf Apweiler, Catherine A Ball, Alvis Brazma, James DeGreef, Nigel Hardy, Henning Hermjakob, Simon J Hubbard, Peter Hussey, Mark Igra, Helen Jenkins, Randall K Julian Jr, Kent Laursen, Stephen G Oliver, Norman W Paton, Susanna-Assunta Sansone, Ugis Sarkans, Christian J Stoeckert Jr, Chris F Taylor, Patricia L Whetzel, Joseph A White, Paul Spellman and Angel Pizarro The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics. Nature Biotechnology 25(10):1127-1133 (doi:10.1038/nbt1347)

Fiehn O, Robertson D, Griffin J, van der Werf M, Nikolau B, Morrison N, Sumner LW, Goodacre R, Hardy NW, Taylor C, Fostel J, Kristal B, Kaddurah-Daouk R, Mendes P, van Ommen B, Lindon JC, Sansone S-A The Metabolomics Standards Initiative (MSI). Metabolomics 3 (3):175-178 (2007) (doi:10.1007/s11306-007-0070-6)
Sumner L, Amberg A, Barrett D, Beale M, Beger R, Daykin C, Fan T, Fiehn O, Goodacre R, Griffin J, Hankemeier T, Hardy N, Harnly J, Higashi R, Kopka J, Lane A, Lindon J, Marriott P, Nicholls A, Reily M, Thaden J, Viant M Proposed minimum reporting standards for chemical analysis. Metabolomics 3(3):211-221 (2007) (doi:10.1007/s11306-007-0082-2)

Denis V. Rubtsov, Helen Jenkins, Christian Ludwig, John Easton, Mark R. Viant, Ulrich GÃƒÂ¼nther, Julian L. Griffin and Nigel Hardy Proposed Reporting Requirements for the Description of NMR-Based Metabolomics Experiments Metabolomics 3(3):223-229 (2007) (doi:10.1007/s11306-006-0040-4)

Nigel Hardy and Helen Jenkins Reporting standards. In: Metabolomics (Topics in Current Genetics Series) Michael C. Jewett and Jens Nielsen (Eds). Springer (2007) (doi:10.1007/4735_2007_0242)

Nigel Hardy and Chris. F. Taylor A roadmap for the establishment of standard data exchange structures for metabolomics. Metabolomics 3(3):243-248 (2007) (doi:10.1007/s11306-007-0071-5)

Helen Jenkins, Manfred Beckmann, John Draper, Nigel Hardy GC-MS Peak Labeling Under ArMet. In: Concepts in Plant Metabolomics, Nikolau, Basil J., Wurtele, Eve Syrkin (Eds.) 2007. ISBN-10: 1-4020-5607-9, ISBN-13: 978-1-4020-5607-9 ((Publisher's site))

Oliver Fiehn, Bruce Kristal, Ben Van Ommen, Lloyd W. Sumner, Susanna-Assunta Sansone, Chris Taylor, Nigel Hardy, Rima Kaddurah-Daouk Establishing Reporting Standards for Metabolomic and Metabonomic Studies: A Call for Participation OMICS: A Journal of Integrative Biology 10(2):158-163 (2006). doi:10.1089/omi.2006.10.158.

Irena Spasic, Warwick Dunn, Giles Velarde, Andy Tseng, Helen Jenkins, Nigel W Hardy, Stephen G Oliver and Douglas B Kell MeMo: a hybrid SQL/XML approach to metabolomic data management for functional genomics BMC Bioinformatics 7:281 (2006) doi:10.1186/1471-2105-7-281

Gareth S. Catchpole, Manfred Beckmann, David P. Enot, Madhav Mondhe, Britta Zywicki, Janet Taylor, Nigel Hardy, Aileen Smith, Ross D. King, Douglas B. Kell, Oliver Fiehn, and John Draper Hierarchical metabolomics demonstrates substantial compositional similarity between genetically-modified and conventional potato crops. Proc. Nat. Acad. Sci. U.S.A. 102(40):14458-14462 (2005) doi:10.1073/pnas.0503955102

John C Lindon, Jeremy K Nicholson, Elaine Holmes, Hector C Keun, Andrew Craig, Jake T M Pearce, Stephen J Bruce, Nigel Hardy, Susanna-Assunta Sansone, Henrik Antti, Par Jonsson, Clare Daykin, Mahendra Navarange, Richard D Beger, Elwin R Verheij, Alexander Amberg, Dorrit Baunsgaard, Glenn H Cantor, Lois Lehman-McKeeman, Mark Earll, Svante Wold, Erik Johansson, John N Haselden, Kerstin Kramer, Craig Thomas, Johann Lindberg, Ina Schuppe-Koistinen, Ian D Wilson, Michael D Reily, Donald G Robertson, Hans Senn, Arno Krotzky, Sunil Kochhar, Jonathan Powell, Frans van der Ouderaa, Robert Plumb, Hartmut Schaefer, Manfred Spraul. Summary recommendations for standardization and reporting of metabolic analyses. Nature Biotechnology 23:833-838 (2005) doi:10.1038/nbt0705-833

Helen Jenkins, Helen Johnson, Baldeep Kular, Trevor Wang, Nigel Hardy. Towards supportive data collection tools for plant metabolomics. Plant Physiology 138:67-77 (2005). Full text doi:10.1104/pp.104.058875.

Helen Jenkins, Nigel Hardy, Manfred Beckmann, John Draper, Aileen R Smith, Janet Taylor, Oliver Fiehn, Royston Goodacre, Raoul J Bino, Robert Hall, Joachim Kopka, Geoffrey A Lane, B Markus Lange, Jang R Liu, Pedro Mendes, Basil J Nikolau, Stephen G Oliver, Norman W Paton, Sue Rhee, Ute Roessner-Tunali, Kazuki Saito, Jørn Smedsgaard, Lloyd W Sumner, Trevor Wang, Sean Walsh, Eve Syrkin Wurtele and Douglas B Kell. A proposed framework for the description of plant metabolomics experiments and their results. Nature Biotechnology 22(12):1601-1606 (2004) Dec. doi:10.1038/nbt1041

Nigel Hardy and Helen Fuell. Databases, data modelling and schemas. In: Metabolic Profiling: Its Role in Biomarker Discovery and Gene Function Analysis, George G. Harrigan and Royston Goodacre (Eds). Kluwer Academic Publishers, Boston, ISBN 1-4020-7370-4 December 2002, 352 pp.

Robert Hall, Mike Beale, Oliver Fiehn, Nigel Hardy, Lloyd Sumner, and Raoul Bino. Plant Metabolomics: The Missing Link in Functional Genomics Strategies. Plant Cell 14(7): 1437-1440. July 2002. (Publisher's on-line version)

Nigel Hardy and Edwin Armstrong. Virtual Sensors for Real Time Applications. Robot Control 2000 (SYROCO'00) Elsevier 2001, ISBN: 0-080-43561-0

Tomos G. Williams and Nigel Hardy. Behavioural Modules for Force Control of Robot Manipulators. Robot Control 2000 (SYROCO'00) Elsevier 2001, ISBN: 0-080-43561-0

Nigel Hardy and Aftab Ahmad. De-Coupling for Re-Use in Design and Implementation Using Virtual Sensors Autonomous Robots 6(3):265-280, June 1999. ISSN 0929-5593 (Publisher's on-line version)

Nigel Hardy and Aftab Ahmad Maroof. ViSIAr - A Virtual Sensor Integration Architecture. Robotica 17(6):635-647. November 1999.

Tomos G. Williams and Nigel W. Hardy. A behaviour-based architecture for force control of robot manipulators. In Int. Conf. Systems, Man and Cybernetics, pages 3532-3537. IEEE, IEEE, October 1998. ISBN 0-7803-4778-1.

T. G. T. Williams and N. W. Hardy. The application of behaviour-based methodologies to compliant motion control. In John Gray and Darwin Caldwell, editors, International Workshop on Advenced Robotics and Intelligent Machines, University of Salford, 25 - 27 March 1997. Telford Reseach Institute of Cybernetics.

Nigel Hardy, editor. Ada Yearbook 1996. Ada Language UK Ltd, York, 1996.

A. Lush, J.J. Rowland, and N.W. Hardy. Handling behaviours. In R. V. Mayorga, editor, Proc. Fourth IASTED International Conference on Robotics and Manufacturing, Honolulu, Hawaii, pages 353 - 356, 1996. ISBN 0-88986-209-5.

N.W. Hardy, J.J. Rowland, and H.R. Nicholls. Supervisory and sensing software for an integrated flexible assembly machine. In M.H. Lee and J.J. Rowland, editors, Intelligent Assembly Systems, pages 181-207. World Scientific, 1995.

D.P. Barnes and N.W. Hardy. Knowledge-based robot supervision. In M.H. Lee and J.J. Rowland, editors, Intelligent Assembly Systems, pages 165-180. World Scientific, 1995.

N.W. Hardy and M.H. Lee. The effect of the product cost factor on error handling in industrial robots. In Maria Gini, editor, Detecting and Resolving Errors in Manufacturing Systems. Papers from the 1994 AAAI Spring Symposium Series, pages 59-64, Menlo Park, CA, March 1994. The AAAI Press. Technical Report SS-94-04, ISBN 0-929280-60-1.

N.W. Hardy, H.R. Nicholls, and J.J. Rowland. Supervision and sensing in flexible assembly. In A. Morecki, G. Bianchio, and K. Jaworek, editors, RoManSy 9. Proceedings of the Ninth CISM-IFToMM Symposium on Theory and Practice of Robots and Manipulators, Lecture Notes in Control and Information Sciences 187, pages 385-390, London, 1993. Lecture Notes in Control and Information Sciences 187, Springer-Verlag.

Howard R. Nicholls and Nigel W. Hardy. Distributed touch sensing. In Howard R. Nicholls, editor, Advanced Tactile Sensing for Robtos, chapter 6, pages 107-122. World Scientific Publichsing Co. Pte. Ltd., Singapore, 1992. ISBN981-02-0870-7.

N. W. Hardy. Experts co-operate for flexible assembly. Assembly Automation, 12(4):28-31, 1992.

N.W. Hardy, H.R. Nicholls, and J.J. Rowland. Supervisory systems software. In C. Loughlin, editor, InFACT: Project, Concepts, Machine, pages 20-22. MCB University Press, Bradford, UK, 1992.

N.W. Hardy, H.R. Nicholls, and J.J. Rowland. The design of sensing commands in the InFACT assembly machine. In L. Basanez, editor, Proc. 23^rd Int. Symp. Industrial Robots, pages 47-52, Barcelona, Nov 1992. Asociación Española de Robótica.

N.W. Hardy. Generic robot programming as reuse. In Proc British Computer Society Software Reuse Group, Imperial College, London, November 1992. lecture.

N.W. Hardy and P.L. Gorman. CLAWS, Ada and software components. In C. Souter and E.S. Atwell, editors, Corpus Linguistics. Rudolfi Press, Amsterdam, 1992.

C.H. Orgill, N.W. Hardy, M.H. Lee, and K.A.I. Sharpe. An application of a multiple agent system for flexible assemble tasks. In Knowledge based envirnments for industrial applications including cooperating expert systems in control. IEE London, 1989.

N.W. Hardy, D.P. Barnes, and M.H. Lee. Automatic diagnosis of task faults in flexible manufacturing systems. Robotica, 7(1):25-35, 1989.

D.P. Barnes, N.W. Hardy, M.H. Lee, C.H. Orgill, and K.A.I. Sharpe. A software development package for intelligent supervisory systems. In Proc. ACME Res. Conf., page 4 pages, Nottingham, September 1988.

V. Robinson, N. W. Hardy, D. P. Barnes, C. J. Price, and M. H. Lee. Experiences with a knowledge engineering toolkit: an assessment in industrial robotics. Knowledge Engineering Review, 2(1):43-54, 1987.

N W Hardy, D P Barnes, and M H Lee. Declarative sensor knowledge in a robot monitoring system. In Ulrich Rembold and Klaus Hörmann, editors, Languages for Sensor-Based Control in Robotics, pages 169-188. Springer-Verlag, Berlin, 1987. ISBN 3-540-17665-9.

M. H. Lee, D. P. Barnes, and N. W. Hardy. Research into error recovery for sensory robots. Sensor Review, 5(4):194-197, 1985.

M. H. Lee, N. W. Hardy, and D. P. Barnes. Research into automatic error recovery. In Proc. Conf. UK Robotics Research, pages 65-69, London, 1984.

N. W. Hardy, M. H. Lee, and D. P. Barnes. Knowledge engineering in robot control. In Proceedings of Expert Systems '83, pages 70-77, Cambridge, 1983.

M. H. Lee, N. W. Hardy, and D. P. Barnes. Error recovery in robot applications. In Proc. British Robot Assoc. Ann. Conf., pages 217-222, 1983.

M. H. Lee, D. P. Barnes, and N. W. Hardy. Knowledge based error recovery in industrial robots. In Proc. 8th. Int. Joint Conf. Artificial Intelligence, pages 824-826, Karlsruhe, FDR., 1983.

D. P. Barnes, M. H. Lee, and N. W. Hardy. A control and monitoring system for multiple-sensor industrial robots. In Proc. 3rd. Int. Conf. Robot Vision and Sensory Controls, pages 471-479, Cambridge, MA. USA., 1983.