A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

S

sample(BufferedImage, float, float) - Static method in class Facemorph.aam.FBOwarp
Non-integer bilinear sampling from a BufferedImage
sample(BufferedImage, float, float) - Static method in class Facemorph.aam.OpenGLwarp
Sample from a BufferedImage
sample(float, float) - Method in class Facemorph.FloatImage
Samples (x,y) using bi-linear interpolation
sample(BufferedImage, float, float) - Static method in class Facemorph.GridWarp2D
Sample from a non-integer point in an image (as an int array) using linear interpolated sampling
sample(float, float) - Method in class Facemorph.MultiscaleInterpolate
Sample from this interpolation
sample(int[], int, int, float, float) - Static method in class Facemorph.Warp
Sample from a non-integer point in an image (as an int array) using linear interpolated sampling
sample(float, float) - Method in class Facemorph.Warp
Samples this warp at non-intege pixels using bi-linear interpolation
sampleAverage() - Method in class Facemorph.FloatImage
 
SAT - Class in Facemorph.haar
Summed area table
SAT(BufferedImg) - Constructor for class Facemorph.haar.SAT
Creates a summed area table from the top left corner
SAT(BufferedImg, boolean) - Constructor for class Facemorph.haar.SAT
Creates a summed area table from the top left corner
SAT(BufferedImg, boolean, boolean) - Constructor for class Facemorph.haar.SAT
Creates a summed area table from the top left corner
save(iniFile) - Method in class Facemorph.Stats.RegressionForm
Save the form data to the appropriate block of an ini file
save(iniFile) - Method in class Facemorph.Stats.RegressionForm_1
Save the form data to the appropriate block of an ini file
saveTemplate(String) - Method in class Facemorph.oesf.Template3D
Writes the template to file
scalarProduct(Vector3) - Method in class Facemorph.Vector3
returns the scalar (dot) product of this vector with v1
scale(float) - Method in class Facemorph.FloatImage
Adds a scaled amount of fimg to this i.e.
scale(FloatImage) - Method in class Facemorph.FloatImage
Scale each pixel in this image by the value of the corresponding pixel in the other image
scale(float) - Method in class Facemorph.GaborPyramid
Multiplies each value in each pyramid by the supplied value
scale - Variable in class Facemorph.haar.Face
The scale of the picture in the summed area table as a function of the filter size.
scale - Variable in class Facemorph.psychomorph.FloatImageControl
Current scale
scale(float) - Method in class Facemorph.Pyramid
Multiplies the values in each subband by the value specified
scale(double[], double) - Static method in class Facemorph.Stats.Functions
 
scale(double) - Method in class Facemorph.Template
Return a new Template as a copy of this one scaled by s
scale(float) - Method in class Facemorph.Vector3
 
scaleInPlace(double[], double) - Static method in class Facemorph.Stats.Functions
 
scaleSliderToValue() - Method in class Facemorph.psychomorph.FloatImageControl
 
scaleWarp(float) - Method in class Facemorph.MultiscaleWarp
 
scaleWarp(float) - Method in class Facemorph.Warp
Scales a warp by the amount specified
selectedRecords - Variable in class Facemorph.Stats.Model.DataDescription
Rows in the data selected for processing (indexed)
selectedVariables - Variable in class Facemorph.Stats.Model.DataDescription
Columns in the data selected for processing (indexed)
serialVersionUID - Static variable in class Facemorph.haar.HaarDemo
Serialisation ID
serialVersionUID - Static variable in class Facemorph.haar.HaarDemoApplet
ID for seriaisation
serialVersionUID - Static variable in class Facemorph.haar.HaarFinder
ID for serialisation
serialVersionUID - Static variable in class Facemorph.haar.HaarReader
ID for serialisation
serialVersionUID - Static variable in class Facemorph.haar.HaarStage
ID for serialisation
Server - Class in Facemorph
The Server class should run on the server in order to allow images to be saved to the server's disk and sent back to the client as a jpeg.
Server(int, String, String) - Constructor for class Facemorph.Server
Create a ServerSocket to listen for connections and start the thread
set(int, int, double) - Method in class Facemorph.CSVFile
 
set(int, int, Object) - Method in class Facemorph.DataBase.Batch
Put a particular value in the variable table
set(int, int, int) - Method in class Facemorph.DataBase.Batch
Put a particular value in the variable table
set(int, int, double) - Method in class Facemorph.DataBase.Batch
Put a particular value in the variable table
set(int, int, String) - Method in class Facemorph.DataBase.Batch
Put a particular value in the variable table
set(String, int) - Method in class Facemorph.DataBase.iniFile
 
set(String, double) - Method in class Facemorph.DataBase.iniFile
 
set(String, boolean) - Method in class Facemorph.DataBase.iniFile
 
set(String, double[]) - Method in class Facemorph.DataBase.iniFile
 
set(String, BigMat) - Method in class Facemorph.DataBase.iniFile
 
set(String, Vector<String>) - Method in class Facemorph.DataBase.iniFile
 
set(String, String) - Method in class Facemorph.DataBase.iniFile
 
set(int, int, float) - Method in class Facemorph.FloatImage
Sets (x,y)=v if (x,y) is within the image
set(int, Gaussian, double) - Method in class Facemorph.GMM
sets the covariance, mean and weight of cluster i
set(float, float, float, float, float, float, float, float, float) - Method in class Facemorph.Matrix3
Sets the values of this matrix
set(int, int, float) - Method in class Facemorph.Matrix3
Sets a coefficient of the matrix
set(int, int, float, float) - Method in class Facemorph.MultiscaleWarp
Sets the value of this warp at the specified point
set(int, DiagonalGaussian, double) - Method in class Facemorph.psm.DiagonalGMM
sets the covariance, mean and weight of cluster i
set(int, int, Point2D.Float) - Method in class Facemorph.psm.PointImage
Set method
set(int[], double) - Method in class Facemorph.tensor.Tensor
Set an element of the Tensor
set(float, float, float) - Method in class Facemorph.Vector3
Set the value of this Vector3D
set(int, int, float, float) - Method in class Facemorph.Warp
Sets the value of this warp at the specified point
set_nocheck(int, int, float) - Method in class Facemorph.FloatImage
Sets (x,y)=v without checking the bounds
set_nocheck(int, float) - Method in class Facemorph.FloatImage
Sets (x,y)=v without checking the bounds
setActive(int, boolean) - Method in class Facemorph.oesf.Template3D
Set a specific point in this Template3D as Active
setAffine(Vector3, Vector3) - Method in class Facemorph.GridWarp2D
Sets the affine terms
setAffine(double[]) - Method in class Facemorph.MultiscaleWarp
 
setAlpha(BufferedImage, FloatImage) - Static method in class Facemorph.aam.FBOwarp
sets the alpha channel of the image
setAlpha(BufferedImage, FloatImage) - Static method in class Facemorph.aam.OpenGLwarp
Set the alpha channel
setAutoLoadTemplateState(boolean) - Method in class Facemorph.psychomorph.DelineatorForm
Set the auto load template state
setAutoSaveTemplateState(boolean) - Method in class Facemorph.psychomorph.DelineatorForm
Set the auto save template state
setAverage(FloatImage, FloatImage, FloatImage) - Method in class Facemorph.PCI
Sets the values of the mean image
setAverageTemplate(Template) - Method in class Facemorph.psychomorph.Average
Set the average template
setBaseDirectory(String) - Method in class Facemorph.DataBase.Batch
Set base directory
setBatch(Batch) - Method in class Facemorph.DataBase.DataSetPanel
 
setBlue(double) - Method in class Facemorph.haar.Colour
Set the blue
setBlur(double) - Method in class Facemorph.mask.BitmapMask
 
setBlur(double) - Method in interface Facemorph.mask.MaskInterface
Sets the size of the Gaussian (or implementation specific) blur to apply to the mask The size specified as multiple applications of a Gaussian blur function
setBlur(double) - Method in class Facemorph.Mask
 
setBlur(double) - Method in class Facemorph.mask.VectorMask
 
setCacheHandler(TemparyFileHandler) - Static method in class Facemorph.DataBase.TemparyFiles.Stub
Setup the tempary cache file handler.
setCascadeListener(CascadeListener) - Method in class Facemorph.haar.HaarCascade
Sets the cascade listener if e.g.
setChannelDisplay() - Method in class Facemorph.psychomorph.FloatImageControl
 
setClusters(int) - Method in class Facemorph.EMtest
Set the number of centres
setColumn(int, double[]) - Method in class Facemorph.BigMat
 
setColumn(int, double[]) - Method in class Facemorph.DataBase.Batch
Sets the values of the given column (index) with the values in the vector of doubles.
setColumnHeader(int, String) - Method in class Facemorph.CSVFile
 
setComponent(int, FloatImage[]) - Method in class Facemorph.PCI
Set one component
setComponents(FloatImage[][], double[]) - Method in class Facemorph.PCI
Sets the components and their variances
setCookie(String, String) - Method in class Facemorph.ClientHttpRequest
adds a cookie to the requst
setCookies(Map) - Method in class Facemorph.ClientHttpRequest
adds cookies to the request
setCookies(String[]) - Method in class Facemorph.ClientHttpRequest
adds cookies to the request
setCount(int) - Method in class Facemorph.PCA
Set the number of components for this PCA
setCount(float) - Method in class Facemorph.PCA
Set the number of components for this PCA
setCount(int) - Method in class Facemorph.pga.MultiSpherePGA
Set the number of the component for the model
setData(float[], int, int) - Method in class Facemorph.FloatImage
Replace the current image data with new data.
setData(Image, Template, Image, Template) - Method in class Facemorph.glmorph.HardwareMorph
Set the morphing data
setData(Image, Template, Image, Template, Image, Template, float, float) - Method in class Facemorph.glmorph.HardwareTransform
Sets the transform data
setData(Image, Template, Image, Template, Image, Template, float, float) - Method in class Facemorph.glmorph.HardwareTransformNoAccum
Sets the transform data
setDependentData(BigMat) - Method in class Facemorph.Stats.BinaryLogisticRegression
 
setDependentData(double[]) - Method in class Facemorph.Stats.BinaryLogisticRegression
 
setDependentData(BigMat) - Method in class Facemorph.Stats.DifferenceOfAverages
 
setDependentData(double[]) - Method in class Facemorph.Stats.DifferenceOfAverages
 
setDependentData(BigMat) - Method in class Facemorph.Stats.ICA
 
setDependentData(double[]) - Method in class Facemorph.Stats.ICA
 
setDependentData(BigMat) - Method in class Facemorph.Stats.ImagePLS
 
setDependentData(double[]) - Method in class Facemorph.Stats.ImagePLS
 
setDependentData(BigMat) - Method in class Facemorph.Stats.ImageRegressor
 
setDependentData(double[]) - Method in class Facemorph.Stats.ImageRegressor
 
setDependentData(BigMat) - Method in class Facemorph.Stats.NumericRegressor
The dependent part of the regression
setDependentData(double[]) - Method in class Facemorph.Stats.NumericRegressor
The dependent part of the regression
setDependentData(BigMat) - Method in class Facemorph.Stats.OvercompleteSPLS
 
setDependentData(double[]) - Method in class Facemorph.Stats.OvercompleteSPLS
 
setDependentData(BigMat) - Method in class Facemorph.Stats.PCAReducer
 
setDependentData(double[]) - Method in class Facemorph.Stats.PCAReducer
 
setDependentData(BigMat) - Method in class Facemorph.Stats.PLSReducer
 
setDependentData(double[]) - Method in class Facemorph.Stats.PLSReducer
 
setDependentData(BigMat) - Method in interface Facemorph.Stats.StatisticalModel
The dependent part of the regression
setDependentData(double[]) - Method in interface Facemorph.Stats.StatisticalModel
The dependent part of the regression
setDisplay(boolean) - Method in class Facemorph.glmorph.HardwareTransform
Sets the display flag
setDisplay(boolean) - Method in class Facemorph.glmorph.HardwareTransformNoAccum
Sets the display status on or off
setDisplayMask(boolean) - Method in class Facemorph.psychomorph.ImageZoomPanel
Swiches display of the mask on and off
setDisplayRectangle(boolean) - Method in class Facemorph.psychomorph.ImageZoomPanel
Should the rectangle be displayed
setDisplayState(int) - Method in class Facemorph.psychomorph.ImageZoomPanel
Set the display state
setDrawLabels(boolean) - Method in class Facemorph.Template
 
setDrawTriangulation(boolean) - Method in class Facemorph.aam.FBOwarp
Should the warp triangulation be drawn
setDrawTriangulation(boolean) - Method in class Facemorph.aam.OpenGLwarp
Indicate that the triangulation should be drawn
setDrawWarp(boolean) - Method in class Facemorph.aam.FBOwarp
Should the warped image be drawn
setDrawWarp(boolean) - Method in class Facemorph.aam.OpenGLwarp
Indicate that the warped image should be drawn (??)
setEditable(boolean) - Method in class Facemorph.AveragerPanel
Sets the editable state of this panel.
setEditState(int) - Method in class Facemorph.psychomorph.ImageZoomPanel
Set the edit state
setEpsilon(double) - Method in interface Facemorph.Stats.DataReducer
Set epsilon, the very small error margin used the determine if the function has finished minimising.
setEpsilon(double) - Method in class Facemorph.Stats.ICA
 
setEpsilon(double) - Method in class Facemorph.Stats.ImagePLS
 
setEpsilon(double) - Method in class Facemorph.Stats.OvercompleteSPLS
 
setEpsilon(double) - Method in class Facemorph.Stats.PCAReducer
 
setEpsilon(double) - Method in class Facemorph.Stats.PLSReducer
 
setFeatureCount(int) - Method in class Facemorph.psm.DiagonalEMFeature
 
setFeatureCount(int) - Method in class Facemorph.psm.DiagonalGaussianFeature
 
setFeatureCount(int) - Method in class Facemorph.psm.DiagonalGMMFeature
 
setFeatureCount(int) - Method in class Facemorph.psm.EMFeature
 
setFeatureCount(int) - Method in interface Facemorph.psm.Feature
Sets the number of features
setFeatureCount(int) - Method in class Facemorph.psm.OESFFeature
 
setFeatureCount(int) - Method in class Facemorph.psm.PatchFeature
Sets the number of features for some initialisation
setFileChooser(JFileChooser) - Method in class Facemorph.psychomorph.PsychoMorphForm
Set the file chooser
setFloatImage(FloatImage) - Method in class Facemorph.mask.BitmapMask
Sets the floatimage to be used as a mask
setFloatImageDisplay() - Method in class Facemorph.psychomorph.FloatImageControl
 
setGLAutoDrawable(GLAutoDrawable) - Method in class Facemorph.aam.FBOwarp
Sets the OpenGL canvas
setGLAutoDrawable(GLAutoDrawable) - Method in class Facemorph.aam.GLAAM
set the Opengl canvas
setGLAutoDrawable(GLAutoDrawable) - Method in class Facemorph.aam.MultiscaleOpenGLAAM
Set the opengl context
setGLAutoDrawable(GLAutoDrawable) - Method in class Facemorph.aam.OpenGLwarp
Set the opengl context
setGrayScale(boolean) - Method in class Facemorph.DataBase.ImageIterator
 
setGreen(double) - Method in class Facemorph.haar.Colour
Set the green
setGridValue(int, int, double, double) - Method in class Facemorph.GridWarp2D
Sets a specific grid value
setImage(BufferedImage) - Method in class Facemorph.aam.FBOwarp
Set the image to warp
setImage(BufferedImage) - Method in class Facemorph.aam.OpenGLwarp
Set the image to warp
setImage(Image) - Method in class Facemorph.AveragerPanel
Sets the image to the one passed in.
setImage(Image) - Method in class Facemorph.glmorph.IO
Set the image
setImage(Image) - Method in class Facemorph.psm.DiagonalEMFeature
 
setImage(Image) - Method in class Facemorph.psm.DiagonalGaussianFeature
 
setImage(Image) - Method in class Facemorph.psm.DiagonalGMMFeature
 
setImage(Image) - Method in class Facemorph.psm.EMFeature
 
setImage(Image) - Method in interface Facemorph.psm.Feature
Set the image to use
setImage(Image) - Method in class Facemorph.psm.OESFFeature
 
setImage(Image) - Method in class Facemorph.psm.PatchFeature
Sets the image to process
setImage(FloatImage) - Method in class Facemorph.psychomorph.FloatImageControl
 
setImage(Image) - Method in class Facemorph.psychomorph.ImageZoomPanel
Set the image to display
setImage(FloatImage[]) - Method in class Facemorph.psychomorph.ImageZoomPanel
Set the image to display
setImage(FloatImage) - Method in class Facemorph.psychomorph.ImageZoomPanel
Set the image to display
setImage(FloatImage) - Method in class Facemorph.Pyramid
Set the low pass residual (at level 0) and delete the bandpass images
setImageFileName(int, String) - Method in class Facemorph.DataBase.Batch
Change the image file name
setImageFileStatus(int, int) - Method in class Facemorph.DataBase.Batch
Set the status of the j^th image
setImageUndoStack(Stack<Image>) - Method in class Facemorph.psychomorph.DelineatorForm
 
setImageZoomPanel(ImageZoomPanel) - Method in class Facemorph.DataBase.DataSetPanel
Set an image zoom panel associated with this Panel, in order to display selected images.
setImageZoomPanel(ImageZoomPanel) - Method in class Facemorph.psychomorph.DelineatorForm
Sets the image-zoom-panel TODO: this is dangerous, need some method of reverting
setImageZoomPanel(ImageZoomPanel) - Method in class Facemorph.psychomorph.FloatImageControl
 
setImageZoomPanel(ImageZoomPanel) - Method in class Facemorph.psychomorph.RectangleForm
public void setPanel(JPanel panel) { this.panel = panel; }
setImgPath(String) - Method in class Facemorph.psychomorph.ImageZoomPanel
 
setIndependentData(BigMat) - Method in class Facemorph.Stats.BinaryLogisticRegression
 
setIndependentData(BigMat) - Method in class Facemorph.Stats.DifferenceOfAverages
 
setIndependentData(BigMat) - Method in class Facemorph.Stats.ICA
 
setIndependentData(Batch) - Method in interface Facemorph.Stats.ImageDataHandler
Supply a set of images to use as the dependent variables of the PLS decomposition
setIndependentData(Batch) - Method in class Facemorph.Stats.ImagePLS
Supply a set of images to use as the dependent variables of the PLS decomposition
setIndependentData(BigMat) - Method in class Facemorph.Stats.ImagePLS
 
setIndependentData(BigMat) - Method in class Facemorph.Stats.ImageRegressor
 
setIndependentData(BigMat) - Method in class Facemorph.Stats.NumericRegressor
The independent part of the regression
setIndependentData(BigMat) - Method in class Facemorph.Stats.OvercompleteSPLS
 
setIndependentData(BigMat) - Method in class Facemorph.Stats.PCAReducer
 
setIndependentData(BigMat) - Method in class Facemorph.Stats.PLSReducer
 
setIndependentData(BigMat) - Method in interface Facemorph.Stats.StatisticalModel
The independent part of the regression
setInputData(BigMat) - Method in class Facemorph.Stats.PCAReducer
 
setInputFormat(Format) - Method in class Facemorph.aam.AAMTracker
Sets the input format for this effect
setInputFormat(Format) - Method in class Facemorph.haar.HaarTrackerEffect
Set the input format
setInterleave(boolean) - Method in class Facemorph.DataBase.ImageIterator
 
setInterleaved(boolean) - Method in class Facemorph.psychomorph.FloatImageControl
 
setJTable(JTable) - Method in class Facemorph.DataBase.ExcelAdapter
 
setLength(int) - Method in class Facemorph.template.Contour
Set the total number of samples along the contour
setLength() - Method in class Facemorph.template.Contour
Sets the length to be the maximum t value
setLineColour(int, Color) - Method in class Facemorph.Template
Set the colour of a line
setLineSelected(int, boolean) - Method in class Facemorph.Template
 
setLocation(int) - Method in interface Facemorph.multifilter.PQplusElement
Set the location in the PQ
setLocationPoint(int, int, int) - Method in class Facemorph.Template
setLocations the point to the specified position
setMask(MaskInterface) - Method in class Facemorph.psychomorph.ImageZoomPanel
Set the mask
setMaxCount(int) - Method in class Facemorph.PCI
Sets the maximum number of components to use
setNormPoints(int[]) - Method in class Facemorph.psychomorph.ImageZoomPanel
Sets the normalisation points
setOutputDimensions(int) - Method in interface Facemorph.Stats.DataReducer
Set the maximum number of output dimensions in the model (pre-build, undefined if set after building some classes will alter the dimensionality of the reduction others will not) If d is greater than the number input variables, the model will truncate at the maximum number of variables.
setOutputDimensions(int) - Method in class Facemorph.Stats.ICA
 
setOutputDimensions(int) - Method in class Facemorph.Stats.ImagePLS
 
setOutputDimensions(int) - Method in class Facemorph.Stats.OvercompleteSPLS
 
setOutputDimensions(int) - Method in class Facemorph.Stats.PCAReducer
 
setOutputDimensions(int) - Method in class Facemorph.Stats.PLSReducer
 
setOutputFormat(Format) - Method in class Facemorph.aam.AAMTracker
Sets the output format
setOutputFormat(Format) - Method in class Facemorph.haar.HaarTrackerEffect
Set the output format
setOutputSize(int, int) - Method in class Facemorph.psychomorph.Average
Set the size of the output image
setParameter(String, String) - Method in class Facemorph.ClientHttpRequest
adds a string parameter to the request
setParameter(String, String, InputStream) - Method in class Facemorph.ClientHttpRequest
adds a file parameter to the request
setParameter(String, File) - Method in class Facemorph.ClientHttpRequest
adds a file parameter to the request
setParameter(String, Object) - Method in class Facemorph.ClientHttpRequest
adds a parameter to the request; if the parameter is a File, the file is uploaded, otherwise the string value of the parameter is passed in the request
setParameters(Map) - Method in class Facemorph.ClientHttpRequest
adds parameters to the request
setParameters(Object[]) - Method in class Facemorph.ClientHttpRequest
adds parameters to the request
setPoint(int, Vector3) - Method in class Facemorph.oesf.Template3D
Retrieve a specific point in this Template3D
setPointColour(int, Color) - Method in class Facemorph.Template
Set the colour of a point
setPoints(Vector<Point2D.Float>, Vector<Point2D.Float>) - Method in class Facemorph.aam.FBOwarp
Sets the start and end warp points
setPoints(Vector<Point2D.Float>, Vector<Point2D.Float>) - Method in class Facemorph.aam.OpenGLwarp
Set the warping points
setPoints(int[]) - Method in class Facemorph.ASM
 
setPointSelected(int, boolean) - Method in class Facemorph.Template
 
setProgressBar(JProgressBar) - Method in class Facemorph.psychomorph.videomorph.VideoMorph
Set the progress bar that needs to be notified of progress updates
setProperty(String, String) - Method in class Facemorph.psychomorph.PsychoMorphForm
 
setPyramid(Pyramid) - Method in class Facemorph.psychomorph.FloatImageControl
 
setPyramidDisplay() - Method in class Facemorph.psychomorph.FloatImageControl
 
setPyramids(Pyramid[]) - Method in class Facemorph.psychomorph.FloatImageControl
 
setReal(boolean) - Method in class Facemorph.GaborPyramid
 
setRect(FloatImage, int, int) - Method in class Facemorph.FloatImage
Insert a patch into the FloatImage at the specified location
setRectangle(Rectangle) - Method in class Facemorph.psychomorph.ImageZoomPanel
Set teh rectangle
setRectangle(Rectangle) - Method in class Facemorph.psychomorph.RectangleForm
 
setRed(double) - Method in class Facemorph.haar.Colour
Set the red
setRow(int, double[]) - Method in class Facemorph.BigMat
 
setSamples(double[]) - Method in class Facemorph.template.Contour
 
setScaled(MultiscaleWarp) - Method in class Facemorph.MultiscaleWarp
Up-scale the small warp into this
setSearchRect(int, int, int, int) - Method in interface Facemorph.haar.CascadeListener
Sets the search rectangle (for drawing)
setSearchRect(int, int, int, int) - Method in class Facemorph.haar.HaarDemo
 
setSearchRect(int, int, int, int) - Method in class Facemorph.haar.HaarDemoApplet
 
setShowLeftImage(boolean) - Method in class Facemorph.glmorph.HardwareMorph
Sets the value of the left image display
setShowRightImage(boolean) - Method in class Facemorph.glmorph.HardwareMorph
Sets the value of the right image display
setShowTriangulation(boolean) - Method in class Facemorph.glmorph.HardwareMorph
switch displaying the triangulation on or off
setSize(int, int) - Method in class Facemorph.aam.FBOwarp
Sets the size
setSize(int, int) - Method in class Facemorph.aam.OpenGLwarp
Sets the size
setSize(int, int) - Method in class Facemorph.BigMat
Set the size of this matrix
setSize(int, int) - Method in class Facemorph.FloatImage
Sets the dimension of the image and reallocates the memory (i.e.
setSize(int) - Method in class Facemorph.Gaussian
Sets the size of this Gaussian
setStandardColours() - Method in class Facemorph.Template
Sets the colours to the standard
setTargetDependentVariance(double) - Method in interface Facemorph.Stats.DataReducer
Stop calculating components when the variance explained in the dependent variable is greater than var
setTargetDependentVariance(double) - Method in class Facemorph.Stats.ICA
 
setTargetDependentVariance(double) - Method in class Facemorph.Stats.ImagePLS
 
setTargetDependentVariance(double) - Method in class Facemorph.Stats.OvercompleteSPLS
 
setTargetDependentVariance(double) - Method in class Facemorph.Stats.PCAReducer
 
setTargetDependentVariance(double) - Method in class Facemorph.Stats.PLSReducer
 
setTargetIndependentVariance(double) - Method in interface Facemorph.Stats.DataReducer
Stop calculating components when the variance explained in the independent variable is greater than var
setTargetIndependentVariance(double) - Method in class Facemorph.Stats.ICA
 
setTargetIndependentVariance(double) - Method in class Facemorph.Stats.ImagePLS
 
setTargetIndependentVariance(double) - Method in class Facemorph.Stats.OvercompleteSPLS
 
setTargetIndependentVariance(double) - Method in class Facemorph.Stats.PCAReducer
 
setTargetIndependentVariance(double) - Method in class Facemorph.Stats.PLSReducer
 
setTargetKaiserGuttman() - Method in interface Facemorph.Stats.DataReducer
 
setTargetKaiserGuttman() - Method in class Facemorph.Stats.ICA
 
setTargetKaiserGuttman() - Method in class Facemorph.Stats.ImagePLS
 
setTargetKaiserGuttman() - Method in class Facemorph.Stats.OvercompleteSPLS
 
setTargetKaiserGuttman() - Method in class Facemorph.Stats.PCAReducer
 
setTargetKaiserGuttman() - Method in class Facemorph.Stats.PLSReducer
 
setTemPath(String) - Method in class Facemorph.psychomorph.ImageZoomPanel
 
setTemplate(Template) - Method in class Facemorph.ASM
Changes the average shape to the provided template.
setTemplate(Template) - Method in class Facemorph.glmorph.IO
Set the Template
setTemplate(Template) - Method in class Facemorph.psychomorph.ImageZoomPanel
Set the Template
setTemplateFileName(int, String) - Method in class Facemorph.DataBase.Batch
Change the template file name
setTemplateFileStatus(int, int) - Method in class Facemorph.DataBase.Batch
Set the status of the j^th template
setThreshold(double) - Method in class Facemorph.haar.HaarStage
Set the threshold
setTol(float) - Method in class Facemorph.template.Contour
 
setTriangulation(DelaunayTriangle[]) - Method in class Facemorph.aam.FBOwarp
Set the triangulation for this warp
setTriangulation(DelaunayTriangle[]) - Method in class Facemorph.aam.OpenGLwarp
Set teh triangulation to use
setUndoStack(Stack<Template>) - Method in class Facemorph.psychomorph.ImageZoomPanel
Set the undo stack for templates
setup(PsychoMorphForm) - Method in class Facemorph.psychomorph.batchable.AddMenuTest
 
setup(PsychoMorphForm) - Method in interface Facemorph.psychomorph.Plugin
Initialise the Batchable This is called once only when the Plugin is first loaded by Psychomorph.
setUpFileDialog(JFileChooser, FileNameExtensionFilter) - Static method in class Facemorph.psychomorph.PsychoMorphForm
Set up the file dialog
setUpFileDialog(JFileChooser, String, String...) - Static method in class Facemorph.psychomorph.PsychoMorphForm
Set up the file dialog
setUpFileDialog(FileNameExtensionFilter) - Method in class Facemorph.psychomorph.PsychoMorphForm
Set up the file dialog
setUpFileDialog(String, String...) - Method in class Facemorph.psychomorph.PsychoMorphForm
Set up the file dialog
setUpFileDialog(JFileChooser, String, String...) - Static method in class Facemorph.Stats.RegressionForm
 
setUpFileDialog(String, String...) - Method in class Facemorph.Stats.RegressionForm
 
setUpFileDialog(JFileChooser, String, String...) - Static method in class Facemorph.Stats.RegressionForm_1
 
setUpFileDialog(String, String...) - Method in class Facemorph.Stats.RegressionForm_1
 
setUPMultiFileDialog(String, String...) - Method in class Facemorph.psychomorph.DelineatorForm
Adds the new types as an option the file dialog
setUPMultiFileDialog(JFileChooser, String, String...) - Static method in class Facemorph.psychomorph.PsychoMorphForm
Adds the new types as an option the file dialog
setUPMultiFileDialog(String, String...) - Method in class Facemorph.psychomorph.PsychoMorphForm
Adds the new types as an option the file dialog
setupStringTokenizer(StreamTokenizer) - Static method in class Facemorph.DataBase.iniFile.Node
 
setUpWarp(FloatImage[], Vector<Point2D.Float>, Vector<Point2D.Float>) - Method in class Facemorph.mdl.GLGroupwiseImageRegistration
Sets up the warping
setValueAt(Object, int, int) - Method in class Facemorph.DataBase.DataSetPanel.BatchTableModel
 
setWarpType(int) - Method in class Facemorph.MultiscaleWarp
Sets the type of warp
setZoom(int, int) - Method in class Facemorph.psychomorph.ImageZoomPanel
Set the zoom level
shapeError(ArrayList<Point2D.Float>, Template, int[]) - Method in class Facemorph.psm.PSMNode
Find the RMS error
ShapePCAAnalyse - Class in Facemorph.psychomorph.pca
 
ShapePCAAnalyse(ASM, File) - Constructor for class Facemorph.psychomorph.pca.ShapePCAAnalyse
 
shift(float, float) - Method in class Facemorph.FloatImage
Creates a scaled and shift version of this image i.e.
shift - Variable in class Facemorph.psychomorph.FloatImageControl
Current shift
shiftColours(BufferedImage, BufferedImage, BufferedImage, double) - Static method in class Facemorph.Transformer
Perform the colour shifting part of the transform
SIGN(double, double) - Method in class Facemorph.BigMat
returns sign(b)*abs(a)
SimpleCondensation - Class in Facemorph.condensation
Simple condensation implementation
SimpleCondensation(double[], double[], int) - Constructor for class Facemorph.condensation.SimpleCondensation
SimpleCondensation constructor
SIMULTANEOUS - Static variable in class Facemorph.aam.AAM
Specifies to use a variation on the simultaneuous (derivative and Hessian regularly updated) algorithm
SIMULTANEOUS - Static variable in class Facemorph.aam.GLAAM
Specifies to use a variation on the simultaneuous (derivative and Hessian regularly updated) algorithm
size() - Method in class Facemorph.DataBase.Batch
 
size() - Method in interface Facemorph.IPQ
Returns the size of the queue
size() - Method in class Facemorph.multifilter.PQplus
Return the number of elements in the heap
size() - Method in class Facemorph.PQ
Return the number of elements in the heap
size() - Method in class Facemorph.Template
Get the number of points in this Template
size(int) - Method in class Facemorph.tensor.Tensor
Get the length of dimension d
slice(double[], double[]) - Method in class Facemorph.Gaussian
Takes a slice through the Gaussian, to produce a new Gaussian first "fixed" elements are fixed remaining elements of the Gaussian are used in the new Gaussian
slice(double[]) - Method in class Facemorph.GMM
Makes a new GMM as sum of slices through Gaussians
slice1d(double[], double[]) - Method in class Facemorph.Gaussian
Takes a 1D slice through the Gaussian along the line through start pointing in direction the output Gaussian is centred on start and the units are 1 equals the length of direction
sliderValues - Variable in class Facemorph.psychomorph.FloatImageControl
A set of values for the logarithmic slider
SmallToolBar - Class in Facemorph.DataBase
 
SmallToolBar() - Constructor for class Facemorph.DataBase.SmallToolBar
Creates new form SmallToolBar
smooth - Variable in class Facemorph.GaborPyramid
low pass residual image
smooth - Variable in class Facemorph.Pyramid
The low pass residual
sobelEdge(double) - Method in class Facemorph.FloatImage
Finds edges in the image with the sobel edge detector
sobelEdgeMag() - Method in class Facemorph.FloatImage
Finds edges in the image with the sobel edge detector
solve(int, int, double) - Method in class Facemorph.aam.CAAMPowell
Estimate the template iteratively
solve(BigMat) - Method in class Facemorph.PCA
Builds this PCA from the data given
solveSingle(int, double) - Method in class Facemorph.aam.CAAMPowell
A single iteration of the detection process
sort(double[]) - Method in class Facemorph.BigMat
sorting routine for jacobi method
SPAN - Static variable in class Facemorph.aam.AAM
Specifies the algorithm with precaculated derivatives and Hessian and the appearance variation projected out.
SPAN - Static variable in class Facemorph.aam.GLAAM
Specifies the algorithm with precaculated derivatives and Hessian and the appearance variation projected out.
SpecificityCombinedTest - Class in Facemorph.mdl
Specificity tester for combined shape + appearance models
SpecificityCombinedTest(ArrayList<BufferedImage>, ArrayList<String>, Template, MaskInterface) - Constructor for class Facemorph.mdl.SpecificityCombinedTest
Constructor for SpecificityCombinedTestFile
SpecificityCombinedTestFile - Class in Facemorph.mdl
Combined shape and colour specificity model testing
SpecificityCombinedTestFile(ArrayList<String>, ArrayList<String>, Template, MaskInterface) - Constructor for class Facemorph.mdl.SpecificityCombinedTestFile
Constructor for SpecificityCombinedTestFile
SpecificityImageTest - Class in Facemorph.mdl
Spcificity test for image (only) model
SpecificityImageTest(ArrayList<BufferedImage>) - Constructor for class Facemorph.mdl.SpecificityImageTest
Constructor for SpecificityImageTest
SpecificityTemplateTest - Class in Facemorph.mdl
Template specificity testing
SpecificityTemplateTest(ArrayList<String>, Template) - Constructor for class Facemorph.mdl.SpecificityTemplateTest
Constructs the test object
SpecificityTest<T> - Interface in Facemorph.mdl
Generic specificity testing interface
SpherePGA - Class in Facemorph.pga
Principal Geodesic Analysis for hyperspherical data (Experimental, only part completed)
SpherePGA(Vector<double[]>, double) - Constructor for class Facemorph.pga.SpherePGA
Creates a new instance of SpherePGA
spline(double) - Method in class Facemorph.BSplineQuadTree
Calculates the cubic B-spline on interval x=[0.0,4.0]
spline(double) - Method in class Facemorph.GridWarp2D
Calculates the cubic B-spline on interval x=[0.0,4.0]
sPLSSVD - Class in Facemorph.Stats
From 'A Sparse PLS for Variable Selection when Integrating Omics data' Le Cao Rossouw Robet-Granie Besse
sPLSSVD() - Constructor for class Facemorph.Stats.sPLSSVD
 
sPLSSVD_DWH - Class in Facemorph.Stats
A version of Le Cao's algorithm modified to be sparse on the patches not on patch
sPLSSVD_DWH() - Constructor for class Facemorph.Stats.sPLSSVD_DWH
 
spsa(double[], double, double, double, double, double, double, int) - Method in class Facemorph.Powell
Implements basic Simultaneous Perturbation Stochastic Approximation (SPSA) algortihm
spsa2(double[], double, double, double, double, double, double, int) - Method in class Facemorph.Powell
Implements basic Simultaneous Perturbation Stochastic Approximation (SPSA) algortihm
sqrDifference(FloatImage, FloatImage, int, int, int) - Method in class Facemorph.FloatImage
find the square difference between this float image with a filter defined by an image using a windowing technique
sqrt() - Method in class Facemorph.FloatImage
Fill in the square root of this FloatImage
square() - Method in class Facemorph.FloatImage
Fill in the image with the square of all the cells
square() - Method in class Facemorph.GaborPyramid
Square each component
squaredMeanDistance(double[]) - Method in class Facemorph.Gaussian
Get the squared distance of the mean from the sample
squareInPlace() - Method in class Facemorph.BigMat
Squares the value of each individual value in the matrix ( .^ in matlab)
sse(FloatImage) - Method in class Facemorph.FloatImage
Calculates the sum of squared errors with fimg
ssr - Variable in class Facemorph.Stats.NumericRegressor
Sum of Squares Residual Error
start() - Method in class Facemorph.glmorph.JMorphApplet
 
startTracking() - Method in class Facemorph.psychomorph.Tracker
Start AAM tracking
stateChanged(ChangeEvent) - Method in class Facemorph.AveragerApplet
This method is called when a different tab is selected.
stateChanged(ChangeEvent) - Method in class Facemorph.KnockedUpApplet
This method is called when a different tab is selected.
StatisticalModel - Interface in Facemorph.Stats
A base class for statistical models
status_exists - Static variable in class Facemorph.DataBase.Batch
The file exists and may be valid
status_invalid - Static variable in class Facemorph.DataBase.Batch
The file exists and is invalid
status_unknown - Static variable in class Facemorph.DataBase.Batch
The status of the file is unavailable
stdevImage - Variable in class Facemorph.Stats.ImagePLS
Store the standard deviation for ZScoring
stdX - Variable in class Facemorph.Stats.OvercompleteSPLS
 
stdX - Variable in class Facemorph.Stats.PLSReducer
 
stdY - Variable in class Facemorph.Stats.OvercompleteSPLS
 
stdY - Variable in class Facemorph.Stats.PLSReducer
 
SteerablePyramid - Class in Facemorph.psm
Implementation of Steerable pyramid
SteerablePyramid() - Constructor for class Facemorph.psm.SteerablePyramid
 
stripComments(String) - Method in class Facemorph.haar.HaarReader
Strip comments from OpenCV haar files, this is because many of the files contain illegal comments (containing the -- string) which the java XML parser complains about
stripPoints(Point2D.Float[], Point2D.Float[], Point2D.Float[], Point2D.Float[], int, int, int, int, int) - Method in class Facemorph.Warp
Removes points from both lists that are outside the image borders of their respective images
stripTriangles() - Method in class Facemorph.glmorph.IO
Strip triangles that lie outside the image
Stub - Class in Facemorph.DataBase.TemparyFiles
 
Stub(String, File) - Constructor for class Facemorph.DataBase.TemparyFiles.Stub
Create a new stub pointing to file f with id id.
Stub() - Constructor for class Facemorph.DataBase.TemparyFiles.Stub
 
sub(Vector3) - Method in class Facemorph.Vector3
 
subMat(int, int, int, int) - Method in class Facemorph.BigMat
Retrieve a sub-part of this matrix
subMat(int, int) - Method in class Facemorph.BigMat
Returns a matrix with row x and column y removed
subMat(int[], int[]) - Method in class Facemorph.BigMat
Return a sub matrix containing only those columns points to by the indices.
subMatCols(int[]) - Method in class Facemorph.BigMat
Return a sub matrix containing only those columns pointed to by the indices.
subMatRows(int[]) - Method in class Facemorph.BigMat
Return a sub matrix containing only those rows pointed to by the indices.
subtract(Complex) - Method in class Facemorph.Complex
Add z to this and return the result as a new complex number
subtract(FloatImage) - Method in class Facemorph.FloatImage
Subtracts fimg from this i.e.
subtract(float) - Method in class Facemorph.FloatImage
Subtract val from each pixel
subtract(GaborPyramid) - Method in class Facemorph.GaborPyramid
Subtract subband-wise two pyramids
subtract(Template3D) - Method in class Facemorph.oesf.Template3D
 
subtract(Pyramid, boolean) - Method in class Facemorph.Pyramid
Adds to the value of each subband of this Pyramid with the corresponding subband in the other Pyramid
subtract(FloatImage, int) - Method in class Facemorph.Pyramid
 
subtract(double[], double[]) - Static method in class Facemorph.Stats.Functions
 
subtract(double[], double) - Static method in class Facemorph.Stats.Functions
 
subtract(Template) - Method in class Facemorph.Template
Creates a new template by subtracting the positions of two input templates output = this - rhs
subtractAverage(int) - Method in class Facemorph.tensor.Tensor
Subtract the row average from each element in that row
subtractAverageInPlace(int) - Method in class Facemorph.tensor.Tensor
Subtract the average from each row without creating a new Tensor to hold the result
subtractFromInPlace(double) - Method in class Facemorph.BigMat
Subtract each value in the matrix from val ( val - X in matlab)
subtractIgnoreZeros(FloatImage[], FloatImage[]) - Static method in class Facemorph.FloatImage
Subtracts fimg from current i.e.
subtractInPlace(BigMat) - Method in class Facemorph.BigMat
Subtracts mat to this
subtractInPlace(double) - Method in class Facemorph.BigMat
Subtract a value from each value in the Matrix ( X .- val in matlab)
subtractMean(double[], double) - Static method in class Facemorph.aam.CAAMSolver
Subtract the mean from the vector
subtractMean(double[], double, int, int) - Static method in class Facemorph.pga.MultiSpherePGA
Subtract the mean sub-vector from another sub-vector
sum() - Method in class Facemorph.FloatImage
Return the sum of all pixels in this image
sumArea(int, int, int, int) - Method in class Facemorph.haar.BufferedImg
Calculate the sum of values in a region conventionally
sumError(FloatImage[], FloatImage[]) - Static method in class Facemorph.FloatImage
Calculates the sum error function between this and fimg using weighting d
sumErrorSquared(FloatImage[], FloatImage[]) - Static method in class Facemorph.FloatImage
Calculates the sum squared error function between this and fimg using weighting d
sumOfTiltedVals(BufferedImg, int, int, int, int) - Static method in class Facemorph.haar.SAT
Direct calculation of tilted sums for testing
sumOfVals(BufferedImg, int, int, int, int) - Static method in class Facemorph.haar.SAT
Direct calculation of sums for testing
SumSquaredResiduals(double[], double[]) - Static method in class Facemorph.Stats.Functions
Calculate the sum of squared residuals between predicted and actual values
sumSquares() - Method in class Facemorph.BigMat
 
supervised - Variable in class Facemorph.Stats.ModelInformation
 
svbksb(double[], BigMat, BigMat, double) - Method in class Facemorph.BigMat
SVD back substitution routine
svbksb(double[], BigMat, double[], double[], double) - Method in class Facemorph.BigMat
Back substitution routine for SVD.
svbksbt(double[], BigMat, BigMat, double) - Method in class Facemorph.BigMat
SVD back substitution routine (transposed)
svbksbt(double[], BigMat, double[], double[], double) - Method in class Facemorph.BigMat
Back substitution routine for SVD.
svdcmp(BigMat, double[]) - Method in class Facemorph.BigMat
Performs Singular Value Decomposition A = UwVt U replace A on output (this goes from being A to being U) v and w are filled in returns true if successful, false otherwise.
svdcmpt(BigMat, double[]) - Method in class Facemorph.BigMat
Performs Singular Value Decomposition A = UwVt U replace A on output (this goes from being A to being U) v and w are filled in returns true if successful, false otherwise.
symmetrise(Template, int[], int) - Method in class Facemorph.Template
Makes this template a symmetrical version of t
syncRecordLengths() - Method in class Facemorph.DataBase.Batch
Make the lengths of the various vectors the same.

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